Posts in category release

0.9.7 release

In this release:

  • OWL Reasoner support via ReasonedFileOntologyService (see example 15)
  • Similarity sorting of the search result list
  • More robust XML parsing of the BioPortal REST signatures
  • A number of minor fixes

Download from:  https://sourceforge.net/projects/ontocat/files/ontoCAT/release/

0.9.6 release

In this release:

Updated OWL API dependence to 3.1

On creation of FileOntologyService you can specify a user-defined ontology accession

New utils package containing convenience methods for the R ontocat package

BioportalOntologyService .getOntologies() now includes the ontology views

FIX: Unnecessary warnings when searching OLS

FIX: Occasional incorrect parsing of ontology accessions when searching OLS

FIX: FileOntologyService throwing an exception if there were classes with no properties

The latest distribution can be downloaded from (under release):

 https://sourceforge.net/projects/ontocat/files/

0.9.5 release

In this release:

  • Added support for labels being part of the class URI
  • FIX: removed unnecessary eager fetching on some of the methods in BioportalOntologyService (e.g. getParents, getChildren where the return list was post-processed on individual term basis)
  • FIX: updated to the latest BioPortal service signature, i.e. instances XML
  • Less warnings on using unoptimised getAllParents and getAllChildren

Download from:  https://sourceforge.net/projects/ontocat/files/